Impeller bolt threads are right hand M5, nothing strange.
The seal is very unique to an MC. Its in three parts. Consult page 10 of the '07 parts manual (same parts as '05). Pay close attention when taking things apart. Its actually eaiser and less damage prone than a normal seal. The part on the shaft is sealed with a tight fitting rubber cup (that doesn't move on the shaft), and has a spring loaded graphite ring. The other half has a ceramic ring and is pressed in the side cover over the bearing. The seal is accomplished by this graphite/ceramic interface that is very low friction and under spring tension. Also, when the system coolant pressure rises with temperature, the sealing force will rise as well. Nice design, no grooved shafts, and never wears out. I doubt your seal is bad, unless the bearing is bad and the shaft is not running true.