Exactly my thoughts.
Jakobi brought forward the idea that the 2013 jug on my 2000 bottom end could be throwing port timing out the window. I was so concerned with running as tight a squish as possible without a machinist that I just threw the thinnest gasket on I could. I popped the pipe off, rolled it over to BDC and behold, the piston sits nearly 1mm above the bottom of the exhaust port!
If I'm to measure squish and get it corrected, I'll have to stack some gaskets. Luckily I have two heads, so downtime is a non issue.
With the piston sitting high, I wonder if my compression ratio is through the roof. Piston looked perfect though, so that's one less thing to fret over.