What, specifically, is the fitment issue? It can be a little tricky getting the air boot, carb, and front boot to fit up properly on some of these bikes. I always start from the air box boot and work forward. I then attach the front boot to the carb, tighten this connection, and then pull the complete assembly forward, tightening the boot to the reed cage last.
If the front boot is worn, a replacement may be in order. It is cheap.