I understand. But it runs bad also in neutral.
So what is the leanest and richest jet i need to try with
It could be a main seal as well (either pulling air through the flywheel side, or trans oil from the rhs).
Have you tried going a step richer on the needle? or a step leaner? What effect does it have on how the bike runs?
How did the piston skirt and cylinder look through the exhaust port? At least pulling the head you'll get an idea of how the bike has been running in terms of piston wash.